We identified four potential transcription factor (TF)-binding motifs associated with allele ... Transcription factor binding motif; TN_Ber, Tunisia Douiret; TP53, Tumor protein p53; TSI, Toscani ...

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def analyze_tfbs(sequence, snp_position): motifs = jaspar.get_motifs() # Mock JASPAR database query affected_tfs = [] for motif in motifs: if snp_position in motif.instances[0].position: ...

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A RECENT study examined the role of TP53 mutations or deletions in the prognosis of myelodysplastic syndrome (MDS) patients undergoing allogeneic haematopoietic stem cell transplantation (allo-HSCT), ...

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# - **Objective:** Identify TF motifs enriched in Differentially methylated Loci (DMLs) ...

2016) was used with the following parameters: rgt-hint function footprinting with the options --organism hg19 --paired-end --atac-seq to identify TF footprints in each sample; rgt-motif analysis ...

2 NHMRC Clinical Trials Centre University of Sydney, Sydney, New South Wales, Australia Objective To clarify the prognostic role of tumour protein 53 (TP53) mutations in patients with oesophageal ...